JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM58_chr1_247852187_247885138	0/0	c0022	1461	2	1	0	0	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0023	1461	2	2	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0024	1461	2	1	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0025	1461	2	1	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0026	1461	2	1	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0027	1461	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0028	1451	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0029	1461	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0030	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0031	1461	1	0	0	0	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0032	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0033	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0034	1461	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0035	1461	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0036	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0037	1461	1	0	0	0	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0038	1461	1	0	0	0	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0039	1461	1	0	0	0	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0040	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0041	1461	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0042	1461	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0043	1461	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0044	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0045	1461	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0046	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0047	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0048	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0049	1461	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM59_chr3_160430503_160454786	1/1	c0001	1212	300	76	60	119	10	33	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0002	1212	27	0	8	7	4	8	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0003	1212	22	15	2	5	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0004	1212	2	0	0	2	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0005	1212	2	0	0	1	0	1	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0006	1212	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0007	1212	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0008	1212	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0009	1212	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0010	1212	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0011	1212	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	c0012	1212	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM5_chr11_5658195_5690074	0/0	c0001	1482	129	24	14	79	4	8	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0002	1482	128	31	20	60	4	13	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/1	c0003	1482	57	2	14	37	0	3	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0004	1482	52	9	18	15	4	6	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0005	1482	29	0	4	15	1	9	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	1/0	c0006	1482	19	15	1	1	0	1	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0007	1482	11	9	2	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0008	1482	5	0	1	0	2	2	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0009	1482	4	3	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0010	1482	2	0	1	0	0	1	copy fasta	TRIM5	chr11	5658195	5690074