JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM5_chr11_5658195_5690074	0/0	c0011	1482	2	0	0	2	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0012	1482	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0013	1482	1	0	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0014	1482	1	0	0	0	1	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0015	1482	1	0	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0016	1482	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0017	1482	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0018	1482	1	0	0	0	0	1	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	c0019	1482	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM60_chr4_165026999_165046749	1/1	c0001	1416	364	89	73	142	14	44	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0002	1416	8	6	2	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0003	1416	5	0	0	4	0	1	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0004	1416	3	0	0	3	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0005	1416	2	0	0	2	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0006	1416	1	0	0	1	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0007	1416	1	1	0	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0008	1416	1	1	0	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0009	1416	1	0	1	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0010	1416	1	1	0	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	c0011	1416	1	0	0	0	0	1	copy fasta	TRIM60	chr4	165026999	165046749
TRIM61_chr4_164963281_164982657	1/1	c0001	1416	154	34	30	60	9	19	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	c0002	1416	149	25	17	90	3	14	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	c0003	1416	72	11	28	16	4	13	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	c0004	1416	25	23	0	2	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	c0005	1416	3	0	0	3	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	c0006	1416	2	0	0	2	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	c0007	1416	1	1	0	0	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	c0008	1416	1	0	1	0	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	c0009	1416	1	0	0	1	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM62_chr1_33140399_33187043	0/1	c0001	1428	224	53	37	104	6	23	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	1/0	c0002	1428	87	14	15	43	4	10	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0003	1428	12	12	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0004	1428	6	6	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0005	1428	2	0	0	2	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0006	1428	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0007	1428	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0008	1428	1	0	0	0	0	1	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0009	1428	1	0	0	1	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0010	1428	1	0	0	1	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0011	1428	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0012	1428	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0013	1428	1	0	0	1	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	c0014	1428	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM63_chr1_26046301_26072630	1/0	c0001	1062	221	58	43	97	4	18	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	c0002	1062	67	26	16	15	3	7	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	c0003	1062	22	9	2	11	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	c0004	1062	13	4	0	9	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	c0005	1062	6	0	2	4	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/1	c0006	1062	6	0	1	0	3	1	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	c0007	1062	1	1	0	0	0	0	copy fasta	TRIM63	chr1	26046301	26072630