JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM63_chr1_26046301_26072630	0/0	c0008	1062	1	0	1	0	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	c0009	1062	1	0	1	0	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM64B_chr11_89865438_89883487	1/0	c0001	1350	89	6	13	59	0	10	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0002	1350	33	1	6	25	1	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0003	1350	20	8	3	9	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0004	1349	14	2	3	4	2	3	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0005	1349	12	0	0	11	0	1	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0006	1350	12	1	0	8	0	3	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0007	1349	4	0	0	4	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0008	1350	3	0	0	3	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0009	1350	3	3	0	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0010	1350	2	0	0	2	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0011	1350	2	0	0	2	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0012	1349	2	0	1	0	1	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0013	1350	1	1	0	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0014	1349	1	1	0	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0015	1349	1	0	1	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0016	1350	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0017	1350	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0018	1350	1	0	1	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0019	1350	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0020	1350	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0021	1350	1	0	1	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0022	1350	1	1	0	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0023	1350	1	0	1	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0024	1349	1	0	0	0	0	1	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	c0025	1350	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64C_chr11_49048714_49064112	1/0	c0001	1353	139	24	16	73	3	22	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0002	1353	133	11	32	70	6	14	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/1	c0003	1353	70	17	11	37	0	4	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0004	1353	43	19	10	8	4	2	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0005	1353	7	6	1	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0006	592	4	4	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0007	1362	4	4	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0008	1353	2	1	1	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0009	1353	2	0	1	0	0	1	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0010	1353	1	1	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0011	1353	1	1	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0012	1353	1	1	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0013	1353	1	0	0	0	1	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0014	1353	1	1	0	0	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0015	1353	1	0	0	0	0	1	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0016	1353	1	0	0	1	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64C_chr11_49048714_49064112	0/0	c0017	1353	1	0	0	1	0	0	copy fasta	TRIM64C	chr11	49048714	49064112
TRIM64_chr11_89961037_89979072	1/0	c0001	1350	20	0	5	14	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	c0002	1350	1	0	1	0	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	c0003	1350	1	0	0	1	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	c0004	1350	1	0	0	1	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	c0005	1350	1	0	0	1	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM64_chr11_89961037_89979072	0/0	c0006	1350	1	0	0	1	0	0	copy fasta	TRIM64	chr11	89961037	89979072