JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM65_chr17_75883963_75901951	1/1	c0001	1554	155	12	38	75	5	23	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0002	1554	81	27	14	29	3	8	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0003	1554	63	22	8	26	4	3	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0004	1554	13	13	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0005	1554	9	8	1	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0006	1554	8	5	3	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0007	1554	7	0	0	7	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0008	1554	5	2	0	3	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0009	1542	3	3	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0010	1554	2	2	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0011	1554	2	0	0	0	0	2	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0012	1554	2	1	0	0	0	1	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0013	1566	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0014	1554	1	0	0	0	0	1	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0015	1554	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0016	1554	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0017	1554	1	1	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0018	1554	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0019	1554	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	c0020	1542	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM66_chr11_8607040_8687665	0/1	c0001	4179	123	37	20	44	5	16	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0002	4179	75	2	15	45	6	7	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0003	4179	58	14	10	30	1	3	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0004	4179	39	0	11	22	2	4	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0005	4179	9	0	0	9	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0006	4179	9	8	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0007	4179	7	0	0	7	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0008	4179	7	1	2	0	2	2	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0009	4179	6	0	0	6	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0010	4179	6	6	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0011	4179	5	4	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0012	4179	5	5	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0013	4179	5	5	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0014	4179	4	0	3	0	1	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0015	4179	4	3	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0016	4179	3	0	0	0	0	3	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0017	4179	2	0	2	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0018	4179	2	2	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0019	4179	2	0	0	2	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0020	4179	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0021	4179	1	0	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0022	4179	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0023	4179	1	0	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	1/0	c0024	4179	1	0	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0025	4179	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0026	4179	1	0	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0027	4179	1	0	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0028	4179	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0029	4179	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0030	4179	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665