JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BEST3_chr12_69648609_69704303	0/0	c0009	2007	1	0	0	1	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0010	2007	1	0	0	0	1	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0011	2007	1	0	0	1	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0012	2007	1	0	0	0	0	1	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0013	2007	1	1	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST4_chr1_44778585_44793170	1/1	c0001	1422	292	71	56	117	8	38	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	c0002	1422	63	6	9	35	5	8	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	c0003	1422	18	0	0	17	1	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	c0004	1422	8	7	1	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	c0005	1422	6	5	1	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	c0006	1422	1	1	0	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	c0007	1422	1	0	0	1	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	c0008	1422	1	0	1	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BET1L_chr11_197924_212399	1/1	c0001	336	399	94	76	171	12	44	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	c0002	336	1	0	0	1	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	c0003	336	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	c0004	336	1	1	0	0	0	0	copy fasta	BET1L	chr11	197924	212399
BET1_chr7_93988245_94009355	1/1	c0001	357	404	92	64	190	12	44	copy fasta	BET1	chr7	93988245	94009355
BEX1_chrX_103057651_103069171	1/1	c0001	378	338	76	63	162	11	24	copy fasta	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	c0002	377	1	0	0	1	0	0	copy fasta	BEX1	chrX	103057651	103069171
BEX2_chrX_103304346_103315990	0/1	c0001	387	267	56	42	137	6	25	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	1/0	c0002	387	31	6	12	0	5	7	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	c0003	387	4	4	0	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	c0004	387	3	2	1	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	c0005	387	1	1	0	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	c0006	386	1	0	0	1	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	c0007	387	1	1	0	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX3_chrX_103371538_103383164	1/1	c0001	306	297	70	51	135	7	32	copy fasta	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	c0002	304	1	0	0	1	0	0	copy fasta	BEX3	chrX	103371538	103383164
BEX4_chrX_103210108_103222246	1/1	c0001	363	333	78	59	155	9	30	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	c0002	363	1	0	0	0	0	1	copy fasta	BEX4	chrX	103210108	103222246
BEX5_chrX_102148712_102160977	1/1	c0001	336	324	76	57	144	11	34	copy fasta	BEX5	chrX	102148712	102160977
BFAR_chr16_14627951_14674236	0/0	c0001	1353	226	69	36	87	12	22	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/1	c0002	1353	80	9	22	32	4	12	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	c0003	1353	3	3	0	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	c0004	1353	2	0	2	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	c0005	1353	2	0	0	2	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	c0006	1353	1	0	1	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	c0007	1353	1	1	0	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	c0008	1353	1	0	0	1	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	c0009	1353	1	0	1	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFSP1_chr20_17488905_17536379	0/0	c0001	1998	105	7	20	61	2	15	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	1/0	c0002	1998	96	12	18	60	2	3	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/1	c0003	1998	85	31	14	27	0	12	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0004	1998	38	4	11	10	5	8	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0005	1998	19	18	1	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0006	1998	8	0	5	0	1	2	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0007	1998	7	7	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0008	1998	6	0	0	6	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0009	1998	4	4	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379