JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM66_chr11_8607040_8687665	0/0	c0031	4179	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0032	4179	1	0	0	0	1	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0033	4179	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0034	4189	1	0	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0035	4179	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0036	4179	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0037	4179	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	c0038	4179	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM67_chr1_231157058_231226565	1/1	c0001	2352	211	47	50	80	11	21	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0002	2352	50	13	1	28	0	8	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0003	2352	44	1	9	32	0	2	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0004	2352	19	18	1	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0005	2352	3	0	0	3	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0006	2352	3	0	2	0	1	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0007	2352	3	0	3	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0008	2352	2	0	0	0	0	2	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0009	2352	2	2	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0010	2352	1	0	0	0	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0011	2352	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0012	2352	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0013	2352	1	0	0	0	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0014	2352	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0015	2352	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0016	2352	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0017	2352	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0018	2352	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0019	2352	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0020	2352	1	0	0	0	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0021	2352	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0022	2352	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0023	2352	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0024	2352	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0025	2352	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	c0026	2352	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM68_chr11_4593672_4613231	1/1	c0001	1458	357	92	63	147	11	42	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	c0002	1458	4	0	3	0	1	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	c0003	1458	1	0	0	1	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM69_chr15_44731528_44772827	0/0	c0001	1503	185	39	40	73	12	21	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/1	c0002	1503	54	10	6	30	1	6	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0003	1503	45	2	8	25	1	9	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0004	1503	31	11	4	12	1	3	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0005	1503	9	4	1	0	3	1	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0006	1503	6	4	2	0	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0007	1503	6	6	0	0	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0008	1503	3	0	0	3	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0009	1503	3	3	0	0	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0010	1503	2	0	0	0	0	2	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0011	1503	2	1	1	0	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0012	1503	1	0	0	1	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	c0013	1503	1	0	0	1	0	0	copy fasta	TRIM69	chr15	44731528	44772827