JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM69_chr15_44731528_44772827	0/0	c0014	1503	1	0	0	1	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM6_chr11_5591637_5617952	0/1	c0001	1551	172	13	32	106	4	16	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0002	1551	80	15	14	33	3	15	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0003	1551	56	4	10	37	2	3	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0004	1551	49	0	5	38	0	6	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0005	1551	32	30	2	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0006	1551	23	1	4	11	4	3	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	1/0	c0007	1551	20	2	12	0	4	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0008	1551	9	6	3	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0009	1551	6	5	1	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0010	1551	5	5	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0011	1551	5	1	3	0	1	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0012	1551	4	2	2	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0013	1551	3	3	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0014	1551	3	3	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0015	1551	2	0	0	1	0	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0016	1551	2	0	0	0	0	2	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0017	1551	2	2	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0018	1551	1	0	0	0	0	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0019	1551	1	0	0	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0020	1551	1	0	0	0	0	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0021	1551	1	0	0	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0022	1551	1	0	0	0	0	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0023	1551	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	c0024	1551	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM71_chr3_32812997_32902824	0/1	c0001	2607	234	62	38	89	15	29	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	c0002	2607	69	11	11	42	0	5	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	c0003	2607	16	15	1	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	1/0	c0004	2607	4	3	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	c0005	2607	2	0	0	2	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	c0006	2607	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	c0007	2607	1	0	0	0	1	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	c0008	2607	1	1	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM72_chr16_31209119_31236537	0/0	c0001	1434	157	34	39	62	9	13	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	1/1	c0002	1434	124	33	18	45	4	22	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0003	1434	11	10	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0004	1434	8	8	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0005	1434	5	4	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0006	1434	1	0	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0007	1434	1	0	0	0	0	1	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0008	1434	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0009	1434	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0010	1434	1	0	0	0	1	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0011	1434	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	c0012	1434	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM73_chr7_75390629_75410605	0/0	c0001	753	249	55	59	85	14	36	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	c0002	753	45	28	8	1	1	7	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	c0003	753	14	2	6	1	1	4	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	c0004	753	3	2	0	1	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	c0005	753	3	0	1	2	0	0	copy fasta	TRIM73	chr7	75390629	75410605