JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM73_chr7_75390629_75410605	0/0	c0006	753	2	2	0	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	c0007	753	2	0	0	2	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	c0008	753	1	0	0	0	0	1	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	c0009	753	1	0	1	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	c0010	753	1	1	0	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	c0011	753	1	0	1	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM74_chr7_72954485_72974466	0/0	c0001	753	138	43	32	42	3	18	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0002	753	70	2	12	44	4	8	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0003	753	69	21	16	18	4	10	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0004	753	10	4	2	2	0	2	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0005	753	4	4	0	0	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0006	753	4	0	0	4	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0007	753	3	0	0	3	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0008	753	2	2	0	0	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0009	753	1	0	0	1	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0010	741	1	0	0	0	1	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0011	753	1	0	0	1	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	c0012	753	1	0	0	1	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM75_chr4_165048866_165065554	1/1	c0001	1407	351	62	70	167	15	35	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0002	1407	50	25	6	11	1	7	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0003	1407	5	4	1	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0004	1407	4	0	0	3	0	1	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0005	1407	2	0	0	2	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0006	1407	2	2	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0007	1407	2	2	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0008	1407	1	0	0	1	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0009	1407	1	1	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0010	1407	1	0	0	0	0	1	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0011	1419	1	0	1	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0012	1407	1	1	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0013	1407	1	1	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0014	1407	1	1	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	c0015	1407	1	1	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM77_chr11_89705299_89722872	1/1	c0001	1353	279	65	43	132	9	28	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	c0002	1353	118	16	26	59	4	13	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	c0003	1353	7	0	3	0	3	1	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	c0004	1353	6	6	0	0	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	c0005	1353	4	4	0	0	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	c0006	1353	3	0	0	3	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	c0007	1353	1	0	0	1	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	c0008	1353	1	0	0	1	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM77_chr11_89705299_89722872	0/0	c0009	1353	1	1	0	0	0	0	copy fasta	TRIM77	chr11	89705299	89722872
TRIM7_chr5_181188924_181210196	1/0	c0001	1536	156	6	47	73	7	22	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0002	1536	69	10	3	53	0	3	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/1	c0003	1536	33	2	3	18	1	8	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0004	1536	27	12	3	8	0	4	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0005	1536	21	18	1	2	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0006	1536	10	10	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0007	1536	9	8	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0008	1536	8	1	5	0	0	2	copy fasta	TRIM7	chr5	181188924	181210196