JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM7_chr5_181188924_181210196	0/0	c0009	1536	7	7	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0010	1536	5	1	2	0	2	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0011	1536	5	5	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0012	1536	5	0	1	3	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0013	1536	4	0	0	4	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0014	1536	4	0	0	4	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0015	1536	4	1	0	2	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0016	1536	4	0	0	4	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0017	1536	3	3	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0018	1536	2	0	0	1	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0019	1536	2	1	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0020	1536	2	2	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0021	1536	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0022	1536	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0023	1536	1	0	0	0	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0024	1536	1	0	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0025	1536	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0026	1536	1	0	0	0	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0027	1536	1	0	0	1	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0028	1536	1	0	0	0	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0029	1536	1	0	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0030	1536	1	0	0	0	0	1	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0031	1536	1	0	0	1	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0032	1536	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0033	1536	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	c0034	1536	1	0	1	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM8_chr10_102639479_102663318	1/1	c0001	1656	360	84	72	146	12	44	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	c0002	1656	10	0	0	10	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	c0003	1656	2	2	0	0	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	c0004	1656	1	0	0	1	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	c0005	1656	1	0	0	1	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM9_chr14_50970266_51100105	0/0	c0001	2388	175	31	40	79	7	18	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	1/1	c0002	2388	140	44	24	49	5	16	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0003	2388	5	4	1	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0004	2388	5	5	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0005	2388	4	0	0	4	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0006	2388	3	0	3	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0007	2388	2	2	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0008	2388	2	0	0	0	2	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0009	2388	1	0	1	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0010	2388	1	1	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0011	2388	1	1	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0012	2388	1	0	1	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0013	2388	1	0	0	1	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	c0014	2388	1	0	0	1	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIML1_chr4_188134441_188152743	1/1	c0001	1407	122	26	13	67	2	12	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0002	1407	54	16	19	6	4	9	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0003	1407	15	5	3	6	1	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0004	1407	11	9	1	0	1	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0005	1407	8	5	3	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743