JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIML1_chr4_188134441_188152743	0/0	c0006	1407	4	4	0	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0007	1407	3	0	0	3	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0008	1407	2	2	0	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0009	1407	2	1	1	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0010	1407	2	2	0	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0011	1407	1	1	0	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0012	1407	1	0	0	1	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0013	1407	1	1	0	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0014	1407	1	0	0	0	0	1	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	c0015	1407	1	0	0	1	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML2_chr4_188086272_188114603	0/1	c0001	1314	109	44	7	40	1	16	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0002	1314	104	0	14	80	1	9	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	1/0	c0003	1314	92	24	26	15	11	15	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0004	1314	70	8	16	43	1	2	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0005	1314	17	5	5	2	3	2	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0006	1314	6	5	1	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0007	1314	6	0	5	0	0	1	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0008	1314	4	0	0	4	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0009	1314	3	1	2	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0010	1314	2	0	0	2	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0011	1314	2	0	0	2	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0012	1314	2	1	1	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0013	1314	2	0	1	0	1	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0014	1314	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0015	1314	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0016	1314	1	0	0	0	0	1	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0017	1314	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0018	1314	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0019	1314	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0020	1314	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0021	1314	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0022	1314	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0023	1314	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	c0024	1314	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIOBP_chr22_37692048_37781556	0/1	c0001	7392	71	1	18	38	5	8	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0002	7386	63	10	6	38	2	7	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0003	7098	39	9	13	8	5	4	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0004	7098	28	25	2	0	1	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0005	7386	11	4	3	1	1	2	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0006	7098	11	5	2	0	0	4	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0007	7386	4	0	2	0	2	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0008	7608	4	0	0	4	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0009	7386	3	0	3	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0010	7386	3	2	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0011	7386	3	0	0	3	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0012	7386	3	0	3	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0013	7098	3	3	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0014	7098	3	3	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	1/0	c0015	7098	3	0	0	0	1	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0016	7098	2	0	2	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556