JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIOBP_chr22_37692048_37781556	0/0	c0067	7392	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0068	7392	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	c0069	7098	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIO_chr5_14138342_14515204	0/1	c0001	9294	53	14	16	19	3	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0002	9294	19	1	5	5	1	7	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	1/0	c0003	9294	18	1	2	8	0	6	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0004	9294	14	13	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0005	9294	10	9	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0006	9294	7	0	1	3	1	2	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0007	9294	7	0	4	2	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0008	9294	5	5	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0009	9294	5	0	5	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0010	9294	4	0	1	1	1	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0011	9294	3	3	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0012	9294	3	3	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0013	9294	3	1	1	0	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0014	9294	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0015	9294	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0016	9294	2	1	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0017	9282	2	1	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0018	9294	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0019	9294	2	0	2	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0020	9294	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0021	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0022	9282	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0023	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0024	9294	1	0	0	0	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0025	9294	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0026	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0027	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0028	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0029	9294	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0030	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0031	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0032	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0033	9294	1	0	0	0	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0034	9294	1	0	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0035	9294	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0036	9294	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0037	9294	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0038	9294	1	0	0	0	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0039	9282	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0040	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0041	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0042	9294	1	0	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0043	9294	1	0	0	0	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0044	9294	1	0	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0045	9294	1	0	0	0	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0046	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0047	9294	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204