JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIO_chr5_14138342_14515204	0/0	c0048	9294	1	0	0	0	0	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0049	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0050	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0051	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0052	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	c0053	9294	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIP10_chr19_6734680_6756530	1/1	c0001	1806	406	86	77	183	16	42	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0002	1806	7	0	3	0	1	3	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0003	1806	6	5	0	1	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0004	1806	4	0	1	0	0	3	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0005	1806	3	0	2	0	1	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0006	1806	3	3	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0007	1806	2	2	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0008	1806	2	0	2	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0009	1806	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0010	1806	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0011	1806	1	0	0	1	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0012	1806	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0013	1806	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0014	1806	1	0	0	1	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0015	1806	1	0	0	0	0	1	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0016	1806	1	0	0	0	0	1	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	c0017	1806	1	0	1	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP11_chr14_91960991_92045059	1/1	c0001	5940	164	38	42	56	11	15	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0002	5940	101	21	8	52	4	16	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0003	5940	27	0	0	24	0	3	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0004	5940	8	7	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0005	5940	6	0	2	4	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0006	5940	5	5	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0007	5940	5	5	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0008	5940	4	3	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0009	5940	4	4	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0010	5940	4	4	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0011	5940	4	0	2	0	0	2	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0012	5940	3	2	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0013	5940	2	2	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0014	5940	2	0	2	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0015	5940	2	0	2	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0016	5940	2	0	0	2	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0017	5940	1	0	0	0	1	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0018	5940	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0019	5940	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0020	5940	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0021	5940	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0022	5940	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0023	5940	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0024	5940	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0025	5940	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0026	5940	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0027	5940	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059