JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIP11_chr14_91960991_92045059	0/0	c0028	5940	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0029	5940	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0030	5940	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0031	5940	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0032	5940	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0033	5940	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0034	5940	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0035	5940	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0036	5940	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	c0037	5940	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP12_chr2_229758837_229927009	1/0	c0001	6204	149	68	29	37	4	10	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	c0002	6204	112	12	29	43	8	20	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/1	c0003	6204	53	9	6	24	4	9	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	c0004	6204	8	0	0	8	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	c0005	6204	3	3	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	c0006	6204	1	0	0	1	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	c0007	6204	1	0	0	0	0	1	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	c0008	6204	1	0	0	0	0	1	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	c0009	6204	1	0	0	1	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	c0010	6204	1	0	0	0	0	1	copy fasta	TRIP12	chr2	229758837	229927009
TRIP13_chr5_887884_923120	1/1	c0001	1299	386	92	74	159	16	43	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0002	1299	4	0	3	0	0	1	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0003	1299	2	2	0	0	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0004	1299	2	0	0	2	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0005	1299	2	1	1	0	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0006	1299	1	1	0	0	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0007	1299	1	0	0	1	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0008	1299	1	0	0	1	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0009	1299	1	0	0	1	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0010	1299	1	0	0	1	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	c0011	1299	1	0	0	1	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP4_chr15_64382836_64460303	0/1	c0001	1746	123	46	20	27	9	20	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	1/0	c0002	1746	53	30	0	11	1	10	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	c0003	1746	16	3	7	1	3	2	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	c0004	1746	9	0	4	0	1	4	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	c0005	1746	6	5	1	0	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	c0006	1746	5	5	0	0	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	c0007	1746	2	2	0	0	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	c0008	1746	2	2	0	0	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	c0009	1746	2	2	0	0	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	c0010	1746	1	1	0	0	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	c0011	1746	1	0	0	1	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP6_chr7_100862387_100878454	1/0	c0001	1431	145	56	22	45	7	14	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0002	1431	139	5	32	81	4	17	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/1	c0003	1431	120	24	15	62	2	16	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0004	1431	7	0	0	7	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0005	1431	4	0	0	4	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0006	1431	2	0	1	0	1	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0007	1431	2	2	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0008	1431	2	0	0	0	2	0	copy fasta	TRIP6	chr7	100862387	100878454