JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIP6_chr7_100862387_100878454	0/0	c0009	1431	1	0	1	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0010	1431	1	0	0	1	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0011	1431	1	0	0	1	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0012	1431	1	1	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0013	1431	1	1	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0014	1431	1	0	0	1	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0015	1431	1	0	0	0	0	1	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0016	1431	1	1	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0017	1431	1	0	1	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0018	1431	1	1	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	c0019	1431	1	1	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIQK_chr8_92878534_92971144	1/1	c0001	261	341	83	50	156	14	36	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	c0002	261	1	1	0	0	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIR_chr19_12725640_12739684	1/1	c0001	531	262	91	64	69	10	26	copy fasta	TRIR	chr19	12725640	12739684
TRIR_chr19_12725640_12739684	0/0	c0002	531	1	0	0	1	0	0	copy fasta	TRIR	chr19	12725640	12739684
TRIR_chr19_12725640_12739684	0/0	c0003	531	1	1	0	0	0	0	copy fasta	TRIR	chr19	12725640	12739684
TRIT1_chr1_39833110_39888504	1/1	c0001	1404	155	43	24	66	5	15	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	c0002	1404	113	37	21	42	2	11	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	c0003	1404	82	13	10	54	1	4	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	c0004	1404	22	0	1	21	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	c0005	1404	2	0	0	0	0	2	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	c0006	1404	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	c0007	1404	1	0	1	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	c0008	1404	1	0	1	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	c0009	1404	1	1	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRMO_chr9_97899489_97927500	0/0	c0001	1326	221	58	23	115	4	21	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0002	1326	65	16	16	22	6	5	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	1/1	c0003	1326	33	0	15	2	7	7	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0004	1326	26	2	13	2	0	9	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0005	1326	12	0	0	12	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0006	1335	6	0	6	0	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0007	1326	4	0	0	4	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0008	1326	1	0	1	0	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0009	1326	1	1	0	0	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0010	1326	1	1	0	0	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0011	1326	1	0	0	1	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0012	1326	1	0	0	1	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0013	1326	1	0	0	0	1	0	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	c0014	1326	1	0	0	1	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMT10A_chr4_99541711_99569039	1/1	c0001	1020	384	94	66	182	0	40	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10B_chr9_37748805_37783972	1/1	c0001	951	366	67	79	160	14	44	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	c0002	951	7	6	1	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	c0003	951	5	5	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	c0004	951	3	3	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	c0005	951	3	3	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	c0006	951	2	0	2	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	c0007	951	1	0	0	1	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	c0008	951	1	0	0	1	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10C_chr3_101556868_101571446	1/0	c0001	1212	360	77	65	168	15	34	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	c0002	1212	57	9	12	25	1	10	copy fasta	TRMT10C	chr3	101556868	101571446