JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BFSP1_chr20_17488905_17536379	0/0	c0010	1998	4	2	2	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0011	1998	3	0	0	3	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0012	1998	2	2	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0013	1998	2	2	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0014	1998	2	1	1	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0015	1998	2	2	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0016	1998	2	0	0	2	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0017	1998	2	0	0	2	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0018	1998	1	1	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0019	1998	1	1	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0020	1998	1	1	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0021	1998	1	1	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0022	1998	1	1	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0023	1998	1	1	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0024	1998	1	0	1	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0025	1998	1	0	1	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	c0026	1998	1	0	0	1	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP2_chr3_133395056_133480208	1/0	c0001	1248	163	71	35	41	3	12	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/1	c0002	1248	97	7	17	49	5	18	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	c0003	1248	8	1	2	2	2	1	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	c0004	1248	2	2	0	0	0	0	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	c0005	1248	1	0	0	1	0	0	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	c0006	1248	1	0	0	0	0	1	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	c0007	1248	1	0	0	0	0	1	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	c0008	1248	1	0	0	0	0	1	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	c0009	1248	1	1	0	0	0	0	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	c0010	1248	1	0	0	1	0	0	copy fasta	BFSP2	chr3	133395056	133480208
BGLAP_chr1_156237184_156248317	1/1	c0001	303	384	82	76	160	16	48	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	c0002	303	5	5	0	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	c0003	303	3	0	1	0	0	2	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	c0004	303	2	2	0	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	c0005	303	2	2	0	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	c0006	303	1	0	0	1	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	c0007	303	1	0	0	1	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	c0008	303	1	1	0	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	c0009	303	1	0	1	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGN_chrX_153489980_153514546	0/1	c0001	1107	128	18	28	67	2	12	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0002	1107	99	6	25	47	8	13	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	1/0	c0003	1107	57	39	5	6	0	6	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0004	1107	19	4	1	14	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0005	1107	6	6	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0006	1107	3	2	1	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0007	1107	2	0	0	2	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0008	1108	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0009	1107	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0010	1106	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0011	1108	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0012	1107	1	0	0	0	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0013	1106	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	c0014	1107	1	0	0	0	1	0	copy fasta	BGN	chrX	153489980	153514546