JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRMT10C_chr3_101556868_101571446	0/0	c0003	1212	5	5	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	c0004	1212	3	0	3	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	c0005	1212	1	0	0	1	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	c0006	1212	1	1	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	c0007	1212	1	1	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	c0008	1212	1	1	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT112_chr11_64311460_64322559	1/1	c0001	378	378	92	70	158	12	44	copy fasta	TRMT112	chr11	64311460	64322559
TRMT11_chr6_125981540_126044276	1/1	c0001	1392	177	78	31	30	12	24	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	c0002	1392	6	0	6	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	c0003	1392	3	3	0	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	c0004	1392	2	2	0	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	c0005	1392	1	1	0	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	c0006	1392	1	0	1	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	c0007	1392	1	1	0	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	c0008	1392	1	1	0	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT12_chr8_124445820_124458026	1/0	c0001	1347	184	23	36	95	13	16	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	c0002	1347	148	60	10	61	1	16	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/1	c0003	1347	43	4	17	10	4	7	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	c0004	1347	27	0	2	17	0	8	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	c0005	1347	1	1	0	0	0	0	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	c0006	1347	1	0	0	1	0	0	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	c0007	1347	1	0	1	0	0	0	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	c0008	1347	1	0	0	0	0	1	copy fasta	TRMT12	chr8	124445820	124458026
TRMT13_chr1_100128163_100155496	0/1	c0001	1446	274	37	64	126	12	34	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	1/0	c0002	1446	57	44	4	5	2	1	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	c0003	1446	24	8	3	8	0	5	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	c0004	1446	1	0	0	1	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	c0005	1446	1	1	0	0	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	c0006	1446	1	0	1	0	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT1L_chr1_185113101_185161953	1/1	c0001	2202	338	88	75	135	9	29	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	c0002	2202	13	0	0	12	0	1	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	c0003	2202	3	0	0	3	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	c0004	2202	2	1	1	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	c0005	2202	1	0	0	1	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	c0006	2202	1	0	0	0	1	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	c0007	2202	1	1	0	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	c0008	2202	1	1	0	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	c0009	2202	1	1	0	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	c0010	2202	1	0	0	1	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1_chr19_13099907_13121740	1/1	c0001	1980	348	93	75	115	16	47	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0002	1980	7	0	0	7	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0003	1980	4	0	0	4	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0004	1980	3	0	0	3	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0005	1980	3	0	3	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0006	1980	2	2	0	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0007	1980	1	1	0	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0008	1980	1	1	0	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0009	1980	1	0	0	1	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0010	1980	1	0	1	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0011	1980	1	0	0	0	0	1	copy fasta	TRMT1	chr19	13099907	13121740