JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRMT1_chr19_13099907_13121740	0/0	c0012	1980	1	0	1	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	c0013	1980	1	1	0	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT2A_chr22_20106875_20122226	1/1	c0001	1878	413	94	63	196	17	41	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0002	1878	6	0	0	6	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0003	1878	6	0	0	6	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0004	1878	3	3	0	0	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0005	1878	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0006	1878	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0007	1878	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0008	1878	1	0	0	0	1	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0009	1878	1	0	0	0	0	1	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0010	1878	1	0	1	0	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0011	1878	1	0	0	0	0	1	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0012	1878	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0013	1939	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0014	1878	1	1	0	0	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0015	1878	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0016	1878	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0017	1878	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	c0018	1878	1	0	0	0	0	1	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2B_chrX_101004350_101057111	1/1	c0001	1515	252	64	44	102	8	32	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	c0002	1515	6	6	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	c0003	1515	3	1	1	0	1	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	c0004	1514	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	c0005	1515	1	1	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	c0006	1513	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT44_chr4_8435777_8481555	0/0	c0001	2274	205	48	34	90	7	26	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	1/1	c0002	2274	109	8	20	67	5	7	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0003	2274	21	0	5	13	0	3	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0004	2274	14	11	1	0	2	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0005	2274	11	11	0	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0006	2274	10	10	0	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0007	2274	4	1	2	0	0	1	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0008	2274	4	0	0	4	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0009	2274	3	0	0	3	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0010	2274	2	0	0	2	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0011	2274	2	0	0	0	0	2	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0012	2274	2	0	0	2	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0013	2274	2	0	0	0	0	2	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0014	2274	2	1	1	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0015	2274	2	2	0	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0016	2274	2	0	0	2	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0017	2274	1	1	0	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0018	2274	1	0	1	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0019	2274	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0020	2315	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0021	2274	1	0	0	0	0	1	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0022	2274	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0023	2274	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0024	2274	1	0	1	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555