JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRMT44_chr4_8435777_8481555	0/0	c0025	2274	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0026	2274	1	1	0	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0027	2274	1	0	1	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0028	2274	1	0	0	0	0	1	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0029	2274	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0030	2274	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	c0031	2274	1	0	0	0	0	1	copy fasta	TRMT44	chr4	8435777	8481555
TRMT5_chr14_60966441_60986079	1/1	c0001	1530	380	64	55	199	16	44	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0002	1530	2	1	1	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0003	1530	2	2	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0004	1530	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0005	1530	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0006	1530	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0007	1530	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0008	1530	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0009	1530	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0010	1530	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	c0011	1530	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT61A_chr14_103524196_103542073	0/1	c0001	870	415	86	82	184	16	46	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	1/0	c0002	870	7	6	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0003	870	3	3	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0004	870	3	0	0	3	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0005	870	2	0	0	2	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0006	870	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0007	870	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0008	870	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0009	870	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0010	870	1	0	0	0	0	1	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0011	870	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0012	870	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	c0013	870	1	0	0	0	0	1	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61B_chr2_28844821_28875309	0/0	c0001	1434	187	30	41	86	8	22	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	1/1	c0002	1434	148	39	27	54	10	16	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0003	1434	7	0	3	4	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0004	1434	5	5	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0005	1434	4	4	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0006	1434	2	2	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0007	1434	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0008	1434	1	0	1	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0009	1434	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0010	1434	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0011	1434	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0012	1434	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	c0013	1434	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT6_chr20_5932228_5955533	1/1	c0001	1494	276	34	48	145	16	31	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	c0002	1494	121	49	21	34	1	16	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	c0003	1494	15	10	3	0	1	1	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	c0004	1491	8	0	8	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	c0005	1494	4	4	0	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	c0006	1494	1	1	0	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533