JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRMT6_chr20_5932228_5955533	0/0	c0007	1494	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	c0008	1494	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	c0009	1494	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT9B_chr8_12940673_13034777	0/1	c0001	1365	124	7	22	82	4	8	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0002	1365	72	20	11	30	1	10	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0003	1365	66	5	12	26	7	16	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0004	1340	19	1	7	5	1	5	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0005	1365	17	7	5	2	1	2	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0006	1340	13	8	3	1	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0007	1340	10	10	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0008	1365	7	7	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0009	1340	6	3	0	3	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0010	1365	5	0	0	5	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0011	1340	5	5	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0012	1365	4	0	4	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0013	1365	4	4	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0014	1340	4	4	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0015	1365	3	3	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0016	1365	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0017	1394	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0018	1365	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0019	1365	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0020	1340	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	1/0	c0021	1365	1	0	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0022	1365	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0023	1365	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0024	1365	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0025	1365	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0026	1365	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0027	1365	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0028	1365	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0029	1365	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0030	1340	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0031	1340	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0032	1340	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0033	1340	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0034	1340	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	c0035	1340	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMU_chr22_46330714_46362340	1/1	c0001	1266	230	35	47	103	12	31	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0002	1266	23	15	4	0	2	2	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0003	1266	13	12	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0004	1266	7	5	1	0	0	1	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0005	1266	5	0	0	5	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0006	1266	4	3	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0007	1266	3	3	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0008	1266	3	0	0	3	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0009	1266	3	3	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0010	1266	2	2	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0011	1266	2	2	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0012	1266	2	2	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340