JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRMU_chr22_46330714_46362340	0/0	c0013	1266	1	0	0	1	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0014	1266	1	0	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0015	1266	1	0	0	1	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0016	1266	1	0	0	1	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0017	1266	1	0	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0018	1266	1	1	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	c0019	1266	1	1	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRNAU1AP_chr1_28548085_28583545	1/1	c0001	864	279	90	68	64	16	39	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	c0002	864	7	0	3	0	1	3	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	c0003	864	4	0	1	0	1	2	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	c0004	864	2	2	0	0	0	0	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	c0005	864	1	0	1	0	0	0	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	c0006	864	1	0	1	0	0	0	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	c0007	864	1	0	0	1	0	0	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	c0008	864	1	0	0	1	0	0	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNP1_chr1_26988692_27005886	0/0	c0001	684	256	72	58	81	15	30	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	c0002	684	12	6	3	0	2	1	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	1/0	c0003	684	11	10	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/1	c0004	684	4	0	1	0	1	1	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	c0005	684	2	2	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	c0006	684	1	1	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	c0007	684	1	1	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	c0008	684	1	0	0	1	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNT1_chr3_3121940_3154023	0/1	c0001	1305	304	45	52	163	9	34	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0002	1305	54	10	21	11	3	9	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	1/0	c0003	1305	25	23	1	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0004	1305	6	6	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0005	1305	4	3	1	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0006	1305	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0007	1305	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0008	1305	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0009	1305	1	0	0	1	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0010	1305	1	0	0	1	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0011	1305	1	0	0	0	0	1	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0012	1305	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0013	1305	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	c0014	1305	1	0	1	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TROAP_chr12_49318255_49336731	1/1	c0001	2337	200	35	30	96	9	28	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0002	2337	30	16	7	2	2	3	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0003	2337	17	15	1	0	0	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0004	2337	11	9	2	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0005	2337	9	7	2	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0006	2337	7	1	0	4	1	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0007	2337	3	3	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0008	2337	2	2	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0009	2337	2	2	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0010	2337	2	2	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0011	2337	1	0	0	0	0	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0012	2337	1	1	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0013	2337	1	1	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731