JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TROAP_chr12_49318255_49336731	0/0	c0014	2337	1	1	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0015	2337	1	0	0	0	0	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0016	2337	1	1	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0017	2337	1	0	0	0	0	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0018	2337	1	0	1	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	c0019	2337	1	0	1	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TRO_chrX_54915824_54936431	1/1	c0001	4296	274	67	48	116	11	30	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0002	4296	8	7	1	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0003	4296	5	0	0	5	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0004	4296	4	0	0	4	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0005	4297	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0006	4296	1	0	1	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0007	4296	1	0	0	0	0	1	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0008	4297	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0009	4295	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0010	4296	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0011	4295	1	0	1	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0012	4294	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0013	4296	1	1	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0014	4300	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0015	4296	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0016	4296	1	1	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0017	4296	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0018	4296	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0019	4296	1	1	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0020	4296	1	0	1	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0021	4300	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0022	4296	1	1	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	c0023	4296	1	1	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRPA1_chr8_72016250_72080584	0/1	c0001	3360	181	35	34	95	3	13	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0002	3360	65	0	4	53	1	7	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0003	3360	31	25	2	2	2	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	1/0	c0004	3360	25	2	11	3	2	6	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0005	3360	21	5	0	11	0	5	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0006	3360	17	0	2	10	3	2	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0007	3360	11	6	2	0	1	2	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0008	3360	10	1	4	0	1	4	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0009	3360	8	6	2	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0010	3360	5	3	2	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0011	3360	3	3	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0012	3360	2	0	2	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0013	3360	2	0	0	2	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0014	3360	2	0	0	2	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0015	3360	2	0	1	0	0	1	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0016	3360	2	0	1	0	0	1	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0017	3360	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0018	3360	1	0	0	0	0	1	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0019	3360	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0020	3360	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0021	3360	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584