JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPA1_chr8_72016250_72080584	0/0	c0022	3360	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0023	3360	1	0	1	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0024	3360	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0025	3360	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0026	3360	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0027	3360	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0028	3360	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0029	3360	1	0	1	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0030	3360	1	0	1	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	c0031	3360	1	0	0	0	1	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPC1_chr3_142719034_142812888	1/1	c0001	2382	154	25	33	71	6	17	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0002	2382	71	5	10	49	2	5	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0003	2382	63	35	4	20	0	4	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0004	2382	22	2	2	18	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0005	2382	11	10	1	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0006	2382	11	11	0	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0007	2382	3	0	1	0	2	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0008	2382	2	1	1	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0009	2382	1	1	0	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0010	2382	1	0	0	1	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	c0011	2382	1	0	0	1	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC3_chr4_121869481_121957060	1/1	c0001	2766	184	69	35	62	3	13	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0002	2766	61	1	10	41	2	7	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0003	2766	48	8	9	21	4	6	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0004	2766	27	6	8	13	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0005	2766	8	8	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0006	2766	5	0	3	0	1	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0007	2766	2	0	1	0	0	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0008	2766	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0009	2766	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0010	2766	1	0	0	0	0	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0011	2766	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0012	2766	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0013	2766	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0014	2766	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0015	2766	1	0	0	0	0	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	c0016	2766	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC4AP_chr20_34997404_35097807	0/1	c0001	2394	225	57	40	94	9	24	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	1/0	c0002	2394	79	18	16	31	3	10	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	c0003	2394	19	18	1	0	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	c0004	2394	6	0	1	5	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	c0005	2394	2	2	0	0	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	c0006	2394	1	0	0	1	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	c0007	2394	1	1	0	0	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	c0008	2394	1	0	0	1	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4_chr13_37627063_37874772	1/1	c0001	2934	248	75	37	91	9	34	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0002	2934	11	1	2	8	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0003	2934	10	9	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0004	2934	4	4	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0005	2934	2	2	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772