JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPC4_chr13_37627063_37874772	0/0	c0006	2934	2	0	0	2	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0007	2934	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0008	2934	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0009	2934	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0010	2934	1	0	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0011	2934	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0012	2934	1	0	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0013	2934	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0014	2934	1	0	0	0	1	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	c0015	2934	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC5OS_chrX_111871181_111908990	1/1	c0001	336	244	65	47	95	7	28	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	c0002	336	5	5	0	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5_chrX_111763011_112087776	1/1	c0001	2922	157	52	20	62	5	16	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	c0002	2922	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	c0003	2922	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	c0004	2922	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	c0005	2922	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC6_chr11_101446564_101589007	1/1	c0001	2796	126	24	28	54	4	14	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0002	2796	39	22	8	1	3	5	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0003	2796	25	21	2	2	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0004	2796	12	0	1	10	0	1	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0005	2796	10	0	3	2	1	4	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0006	2796	6	0	0	4	0	2	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0007	2796	5	5	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0008	2796	5	5	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0009	2796	4	0	0	4	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0010	2796	3	0	0	2	0	1	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0011	2796	3	0	0	3	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0012	2796	2	2	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0013	2796	2	2	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0014	2796	2	0	2	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0015	2796	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0016	2796	1	0	0	1	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0017	2796	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0018	2796	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0019	2796	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0020	2796	1	0	0	0	0	1	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0021	2796	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	c0022	2796	1	0	0	1	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC7_chr5_136207745_136370545	1/1	c0001	2589	181	47	28	71	11	22	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	c0002	2589	71	24	12	30	3	2	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	c0003	2589	1	0	1	0	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	c0004	2589	1	1	0	0	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	c0005	2589	1	0	0	1	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	c0006	2589	1	1	0	0	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	c0007	2589	1	0	1	0	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	c0008	2589	1	1	0	0	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPM1_chr15_30996065_31106725	0/0	c0001	4878	48	4	11	22	2	9	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0002	4878	29	15	3	5	2	4	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0003	4878	22	16	4	1	0	1	copy fasta	TRPM1	chr15	30996065	31106725