JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPM1_chr15_30996065_31106725	0/0	c0054	4878	1	1	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0055	4878	1	0	0	0	0	1	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0056	4878	1	1	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0057	4878	1	1	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0058	4878	1	1	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0059	4878	1	0	1	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0060	4878	1	0	1	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0061	4878	1	0	0	0	1	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	c0062	4878	1	0	1	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM2_chr21_44348621_44447644	0/0	c0001	4512	20	1	8	5	1	5	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/1	c0002	4512	5	0	1	2	1	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0003	4512	2	1	1	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0004	4512	2	0	1	0	0	1	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	1/0	c0005	4512	2	0	1	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0006	4512	2	2	0	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0007	4512	2	0	2	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0008	4512	1	1	0	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0009	4512	1	1	0	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0010	4512	1	0	1	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0011	4512	1	0	0	0	0	1	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0012	4512	1	0	0	0	0	1	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0013	4512	1	1	0	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0014	4512	1	1	0	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0015	4512	1	0	1	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	c0016	4512	1	0	0	1	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM3_chr9_70524060_71126621	0/0	c0001	5160	39	7	9	19	4	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0002	5160	37	15	4	10	2	6	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0003	5160	19	2	6	6	3	2	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0004	5160	16	4	3	4	1	4	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0005	5160	12	0	1	3	3	5	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0006	5160	9	1	1	3	1	3	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0007	5160	8	0	0	8	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0008	5160	8	5	1	2	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0009	5160	6	1	2	0	0	3	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0010	5160	5	1	0	3	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0011	5160	5	1	0	4	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0012	5160	4	4	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0013	5160	4	1	1	0	0	2	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0014	5160	3	3	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0015	5160	3	3	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0016	5160	2	2	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0017	5160	2	1	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0018	5160	2	0	0	0	0	2	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0019	5160	2	2	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0020	5160	2	1	0	0	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0021	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0022	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0023	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0024	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0025	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621