JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BHLHA15_chr7_98206439_98220457	1/1	c0001	570	452	96	83	205	16	50	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	c0002	570	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	c0003	570	1	0	1	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	c0004	570	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	c0005	570	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA9_chr17_1265444_1276815	1/1	c0001	708	258	40	55	114	12	35	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	c0002	708	173	52	28	78	6	9	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	c0003	708	3	3	0	0	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	c0004	708	2	0	0	0	0	2	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	c0005	708	1	1	0	0	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	c0006	708	1	0	0	1	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	c0007	708	1	0	0	1	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	c0008	708	1	0	0	1	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	c0009	708	1	0	1	0	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	c0010	708	1	0	0	1	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHE22_chr8_64575365_64588627	0/0	c0001	1146	179	25	24	112	4	14	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	1/1	c0002	1146	169	24	37	71	9	26	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0003	1149	27	17	5	2	0	3	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0004	1149	14	14	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0005	1155	6	0	3	0	1	2	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0006	1146	6	0	0	6	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0007	1155	5	5	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0008	1149	4	4	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0009	1152	4	2	1	1	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0010	1146	4	3	1	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0011	1146	2	0	0	0	2	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0012	1146	1	0	0	0	0	1	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0013	1152	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0014	1146	1	0	0	0	0	1	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0015	1149	1	0	0	1	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0016	1158	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0017	1146	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0018	1146	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0019	1146	1	0	1	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0020	1134	1	0	1	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0021	1146	1	0	0	0	0	1	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0022	1149	1	0	0	1	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	c0023	1146	1	0	1	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE23_chr20_63000927_63011964	1/1	c0001	726	417	77	78	198	16	46	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	c0002	726	10	8	2	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	c0003	726	10	8	2	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	c0004	729	3	1	0	2	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	c0005	726	2	2	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	c0006	726	1	1	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	c0007	726	1	1	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	c0008	726	1	1	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	c0009	726	1	1	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE40_chr3_4974437_4990323	1/1	c0001	1239	340	80	57	151	17	33	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	c0002	1239	84	4	25	47	1	7	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	c0003	1239	6	6	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323