JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPM3_chr9_70524060_71126621	0/0	c0026	5160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0027	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0028	5160	1	0	0	0	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0029	5160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0030	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0031	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0032	5160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0033	5160	1	0	0	0	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0034	5160	1	0	1	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0035	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0036	5160	1	0	0	0	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0037	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0038	5160	1	0	1	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0039	5160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0040	5160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0041	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0042	5160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0043	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0044	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0045	5160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	c0046	5160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM4_chr19_49152792_49216836	1/0	c0001	3645	221	41	58	77	14	30	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0002	3645	15	0	0	11	0	4	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0003	3645	13	6	3	4	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0004	3633	9	8	1	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/1	c0005	3645	5	2	0	0	1	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0006	3645	4	4	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0007	3645	3	3	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0008	3645	3	3	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0009	3645	3	3	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0010	3645	2	0	2	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0011	3645	2	2	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0012	3645	2	0	2	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0013	3645	2	2	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0014	3633	2	2	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0015	3609	2	0	0	0	1	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0016	3645	2	0	0	2	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0017	3631	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0018	3645	1	0	0	0	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0019	3645	1	1	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0020	3645	1	1	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0021	3645	1	1	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0022	3645	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0023	3645	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0024	3645	1	0	1	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0025	3645	1	0	0	0	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0026	3645	1	0	0	0	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0027	3617	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0028	3645	1	0	1	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0029	3645	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836