JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPM4_chr19_49152792_49216836	0/0	c0030	3645	1	1	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0031	3645	1	1	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0032	3645	1	0	0	0	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0033	3645	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0034	3633	1	1	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0035	3645	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0036	3645	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0037	3645	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	c0038	3645	1	0	0	1	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM5_chr11_2399515_2449514	0/0	c0001	3498	77	17	16	36	0	8	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0002	3498	42	0	11	28	0	3	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0003	3498	40	5	13	10	1	11	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0004	3498	31	0	8	21	0	2	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0005	3498	27	0	10	6	6	5	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0006	3498	27	9	1	16	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0007	3498	17	1	2	12	2	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0008	3498	13	0	0	12	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	1/0	c0009	3498	12	0	0	4	1	6	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0010	3498	9	0	0	9	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0011	3498	8	7	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0012	3498	8	7	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0013	3498	7	1	0	6	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0014	3498	7	0	3	0	4	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0015	3498	5	5	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0016	3498	3	0	3	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0017	3498	3	0	1	0	2	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0018	3498	3	0	0	3	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0019	3498	3	0	0	3	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0020	3498	3	1	0	0	0	2	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0021	3498	3	3	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0022	3498	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0023	3498	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0024	3498	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0025	3498	2	0	0	0	0	2	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0026	3498	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0027	3498	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0028	3498	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0029	3498	2	0	0	2	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/1	c0030	3498	2	0	0	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0031	3498	2	0	1	0	1	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0032	3498	2	0	0	2	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0033	3498	2	0	1	0	1	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0034	3498	2	0	0	2	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0035	3498	2	0	0	2	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0036	3498	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0037	3498	2	0	2	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0038	3498	1	0	0	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0039	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0040	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0041	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514