JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPM5_chr11_2399515_2449514	0/0	c0042	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0043	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0044	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0045	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0046	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0047	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0048	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0049	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0050	3498	1	0	0	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0051	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0052	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0053	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0054	3498	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0055	3498	1	0	0	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0056	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0057	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0058	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0059	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0060	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0061	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0062	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0063	3498	1	0	0	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0064	3498	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0065	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0066	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0067	3498	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0068	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0069	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0070	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0071	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0072	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0073	3498	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0074	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0075	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0076	3498	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0077	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0078	3498	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0079	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0080	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0081	3498	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0082	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	c0083	3498	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM6_chr9_74717495_74892921	0/0	c0001	6069	39	0	14	20	0	5	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0002	6069	29	10	8	4	3	4	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	1/1	c0003	6069	29	2	11	5	4	5	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0004	6069	27	3	4	14	1	5	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0005	6069	21	0	0	20	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0006	6069	17	2	4	8	2	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0007	6069	16	0	6	9	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0008	6069	9	5	2	0	2	0	copy fasta	TRPM6	chr9	74717495	74892921