JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPM6_chr9_74717495_74892921	0/0	c0009	6069	6	6	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0010	6069	6	6	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0011	6069	6	5	0	0	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0012	6069	6	0	0	5	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0013	6069	5	5	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0014	6069	5	1	0	4	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0015	6069	5	1	0	4	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0016	6069	4	4	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0017	6069	3	0	0	3	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0018	6069	3	3	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0019	6069	3	0	0	2	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0020	6069	3	0	1	0	1	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0021	6069	2	2	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0022	6069	2	2	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0023	6069	2	2	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0024	6069	2	2	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0025	6069	2	2	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0026	6069	2	2	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0027	6069	2	2	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0028	6069	2	0	2	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0029	6069	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0030	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0031	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0032	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0033	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0034	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0035	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0036	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0037	6069	1	0	0	0	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0038	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0039	6069	1	0	0	1	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0040	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0041	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0042	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0043	6069	1	0	0	1	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0044	6069	1	0	0	1	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0045	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0046	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0047	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0048	6069	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0049	6069	1	0	0	0	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0050	6069	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0051	6069	1	0	0	0	1	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0052	6069	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0053	6069	1	0	0	1	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0054	6069	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0055	6069	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	c0056	6069	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM7_chr15_50552158_50691797	0/0	c0001	5598	136	29	33	58	4	12	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	1/1	c0002	5598	122	22	23	55	5	15	copy fasta	TRPM7	chr15	50552158	50691797