JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPM7_chr15_50552158_50691797	0/0	c0003	5598	41	1	3	30	3	4	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0004	5598	30	21	5	2	0	2	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0005	5595	5	5	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0006	5595	4	4	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0007	5598	3	3	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0008	5598	2	2	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0009	5598	2	2	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0010	5598	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0011	5598	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0012	5598	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0013	5598	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0014	5598	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0015	5598	1	0	0	0	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	c0016	5598	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM8_chr2_233912373_234024522	1/0	c0001	3315	93	21	25	23	6	17	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0002	3315	46	24	1	16	0	5	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/1	c0003	3315	45	0	3	34	2	5	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0004	3315	25	1	11	9	3	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0005	3315	20	1	4	13	1	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0006	3315	14	0	0	14	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0007	3315	13	9	0	2	0	2	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0008	3315	10	1	8	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0009	3315	10	1	5	4	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0010	3315	7	1	2	3	0	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0011	3315	5	0	4	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0012	3315	3	3	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0013	3315	3	3	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0014	3315	3	0	1	2	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0015	3315	2	1	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0016	3315	2	2	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0017	3315	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0018	3315	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0019	3315	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0020	3315	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0021	3315	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0022	3315	1	0	0	0	0	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0023	3315	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0024	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0025	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0026	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0027	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0028	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0029	3315	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0030	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0031	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0032	3315	1	0	0	0	0	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0033	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0034	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0035	3315	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	c0036	3315	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522