JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPM8_chr2_233912373_234024522	0/0	c0037	3315	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPS1_chr8_115403496_115673975	1/1	c0001	3885	137	23	38	46	10	18	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0002	3885	36	32	3	0	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0003	3885	7	7	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0004	3885	2	0	0	0	2	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0005	3885	2	2	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0006	3885	1	0	0	0	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0007	3885	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0008	3885	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0009	3885	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0010	3885	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0011	3885	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0012	3885	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	c0013	3885	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPT1_chr11_64218816_64231186	1/1	c0001	762	306	74	42	147	7	34	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	c0002	762	50	7	20	20	1	2	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	c0003	762	25	1	7	12	0	5	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	c0004	762	9	2	7	0	0	0	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	c0005	762	1	0	0	0	0	1	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	c0006	762	1	0	0	1	0	0	copy fasta	TRPT1	chr11	64218816	64231186
TRPV1_chr17_3560446_3614411	0/0	c0001	2520	120	46	42	15	3	14	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0002	2520	73	1	9	57	2	4	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0003	2520	46	5	14	20	4	3	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0004	2520	40	1	2	27	2	8	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0005	2520	13	0	0	13	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0006	2520	11	0	1	6	0	4	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0007	2520	10	1	6	3	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0008	2520	8	5	0	0	0	3	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/1	c0009	2520	7	0	0	4	0	2	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0010	2520	5	0	0	5	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	1/0	c0011	2520	5	1	2	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0012	2520	5	0	0	0	3	2	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0013	2520	3	0	0	3	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0014	2520	3	1	0	0	0	2	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0015	2520	3	3	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0016	2520	3	3	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0017	2520	2	0	0	2	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0018	2520	2	0	0	2	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0019	2520	2	0	0	2	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0020	2520	2	0	0	2	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0021	2520	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0022	2520	1	0	0	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0023	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0024	2520	1	0	0	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0025	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0026	2520	1	0	0	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0027	2520	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0028	2520	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0029	2520	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0030	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411