JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPV1_chr17_3560446_3614411	0/0	c0031	2520	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0032	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0033	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0034	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0035	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0036	2520	1	0	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0037	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0038	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0039	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0040	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0041	2520	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0042	2520	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0043	2520	1	0	0	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0044	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0045	2520	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0046	2520	1	0	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0047	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0048	2520	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	c0049	2520	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV2_chr17_16410571_16442003	1/0	c0001	2295	206	22	53	88	6	36	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/1	c0002	2295	60	17	20	10	5	7	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0003	2295	36	0	0	36	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0004	2295	35	33	1	0	1	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0005	2295	8	6	2	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0006	2295	5	5	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0007	2295	5	4	1	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0008	2295	4	0	0	4	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0009	2295	3	3	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0010	2295	3	2	1	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0011	2295	1	0	0	1	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0012	2295	1	0	0	1	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0013	2295	1	1	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0014	2295	1	0	0	1	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0015	2295	1	0	0	1	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0016	2295	1	1	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0017	2295	1	1	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0018	2295	1	0	0	0	0	1	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0019	2295	1	0	0	1	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0020	2295	1	0	0	0	0	1	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0021	2295	1	1	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0022	2295	1	0	0	0	0	1	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	c0023	2295	1	0	0	1	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV3_chr17_3505502_3562812	0/0	c0001	2373	51	1	13	29	2	6	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0002	2373	51	2	12	22	4	11	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/1	c0003	2373	39	3	19	2	4	10	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0004	2373	30	0	2	27	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0005	2373	12	9	2	0	1	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0006	2373	10	0	2	1	2	5	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0007	2373	10	0	4	6	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0008	2373	9	1	5	1	0	2	copy fasta	TRPV3	chr17	3505502	3562812