JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPV3_chr17_3505502_3562812	0/0	c0009	2373	9	0	3	5	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0010	2373	8	0	0	6	0	2	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0011	2373	7	7	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0012	2373	6	0	0	6	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0013	2373	6	0	2	4	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0014	2373	6	0	2	0	1	3	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0015	2373	5	5	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0016	2373	5	0	0	5	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0017	2373	5	0	3	0	1	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0018	2373	4	4	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0019	2373	4	4	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0020	2373	4	0	0	3	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0021	2373	3	2	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0022	2373	3	3	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0023	2373	3	3	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0024	2373	3	1	1	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0025	2373	3	0	0	3	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0026	2373	3	3	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0027	2373	3	3	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0028	2373	3	0	0	3	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0029	2373	3	0	0	3	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0030	2373	2	2	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0031	2373	2	2	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0032	2373	2	2	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0033	2373	2	2	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0034	2373	2	0	0	2	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0035	2373	2	0	0	2	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0036	2373	2	0	0	2	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0037	2373	2	2	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0038	2373	2	2	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0039	2373	2	2	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0040	2373	2	2	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0041	2373	2	0	0	1	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0042	2373	2	0	0	2	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0043	2373	2	0	1	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0044	2373	2	1	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0045	2373	2	0	0	2	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	1/0	c0046	2373	1	0	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0047	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0048	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0049	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0050	2373	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0051	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0052	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0053	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0054	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0055	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0056	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0057	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0058	2373	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812