JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPV3_chr17_3505502_3562812	0/0	c0059	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0060	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0061	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0062	2373	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0063	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0064	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0065	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0066	2373	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0067	2373	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0068	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0069	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0070	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0071	2373	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0072	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0073	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0074	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0075	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0076	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0077	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0078	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0079	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0080	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0081	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0082	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0083	2373	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0084	2373	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0085	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0086	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0087	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0088	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0089	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0090	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0091	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0092	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0093	2373	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0094	2373	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0095	2373	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0096	2373	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0097	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0098	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0099	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0100	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0101	2373	1	0	0	0	1	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0102	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0103	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0104	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0105	2373	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0106	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0107	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	c0108	2373	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812