JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPV3_chr17_3505502_3562812	0/0	c0109	2373	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV4_chr12_109778089_109838398	0/0	c0001	2616	96	11	11	65	3	6	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0002	2616	75	8	22	32	2	11	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	1/1	c0003	2616	55	17	19	5	7	5	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0004	2616	26	14	3	2	1	6	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0005	2616	23	14	2	0	0	7	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0006	2616	18	3	0	13	0	2	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0007	2616	7	0	7	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0008	2616	6	4	2	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0009	2616	4	4	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0010	2616	3	0	3	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0011	2616	3	0	1	0	0	2	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0012	2616	3	3	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0013	2616	2	0	1	0	1	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0014	2616	2	0	2	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0015	2616	2	0	0	1	0	1	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0016	2616	2	0	0	0	2	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0017	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0018	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0019	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0020	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0021	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0022	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0023	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0024	2616	1	0	0	0	0	1	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0025	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0026	2616	1	0	0	0	0	1	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0027	2616	1	0	0	1	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0028	2616	1	0	1	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0029	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0030	2616	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0031	2616	1	0	0	0	0	1	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0032	2616	1	0	0	0	0	1	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	c0033	2616	1	0	0	1	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV5_chr7_142903101_142938746	0/0	c0001	2190	134	27	28	58	5	16	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0002	2190	31	20	2	9	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0003	2190	24	23	1	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/1	c0004	2190	20	0	8	6	3	2	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0005	2190	13	4	2	1	0	6	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0006	2190	7	7	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0007	2190	5	5	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0008	2190	3	3	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0009	2190	3	2	1	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0010	2190	2	2	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0011	2190	1	1	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0012	2190	1	1	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0013	2190	1	0	1	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0014	2190	1	0	1	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0015	2190	1	0	0	0	0	1	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0016	2190	1	0	0	0	0	1	copy fasta	TRPV5	chr7	142903101	142938746