JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BHLHE40_chr3_4974437_4990323	0/0	c0004	1239	2	2	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	c0005	1239	2	2	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	c0006	1239	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	c0007	1239	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE41_chr12_26115030_26130037	1/0	c0001	1449	247	67	30	104	12	33	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/1	c0002	1449	139	7	33	81	4	13	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0003	1449	15	14	1	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0004	1449	6	6	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0005	1449	4	0	4	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0006	1449	4	2	2	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0007	1461	2	0	2	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0008	1449	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0009	1449	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0010	1449	1	0	0	1	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0011	1449	1	0	0	1	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	c0012	1460	1	0	0	1	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHMT2_chr5_79064767_79095069	1/1	c0001	1092	214	59	27	99	3	24	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0002	1092	157	18	37	69	11	22	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0003	1092	9	8	1	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0004	1092	3	3	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0005	1092	1	1	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0006	1092	1	0	1	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0007	1092	1	1	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0008	1092	1	0	0	1	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0009	1092	1	1	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0010	1092	1	0	0	1	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	c0011	1092	1	1	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT_chr5_79106809_79137288	1/0	c0001	1221	302	75	36	147	13	30	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	c0002	1221	81	18	20	30	3	10	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	c0003	1221	31	1	6	23	0	1	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	c0004	1221	12	0	10	1	0	1	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	c0005	1221	2	0	2	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	c0006	1221	1	1	0	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	c0007	1221	1	1	0	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	c0008	1221	1	0	0	1	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/1	c0009	1221	1	0	0	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BICC1_chr10_58507872_58836435	0/1	c0001	2925	60	21	13	14	7	4	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	1/0	c0002	2925	41	11	11	14	1	3	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0003	2925	14	11	3	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0004	2925	6	6	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0005	2925	4	4	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0006	2925	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0007	2925	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0008	2925	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0009	2925	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0010	2925	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0011	2925	1	0	1	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	c0012	2925	1	0	0	0	0	1	copy fasta	BICC1	chr10	58507872	58836435
BICD1_chr12_32101847_32388633	1/1	c0001	2928	169	69	39	34	5	20	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	c0002	2928	102	12	6	74	4	6	copy fasta	BICD1	chr12	32101847	32388633