JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRPV5_chr7_142903101_142938746	0/0	c0017	2190	1	0	0	1	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0018	2190	1	0	1	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0019	2190	1	1	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0020	2190	1	0	0	1	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	c0021	2190	1	0	1	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV6_chr7_142866208_142890745	0/1	c0001	2298	158	32	38	51	8	28	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0002	2298	40	28	3	8	1	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0003	2298	12	5	2	2	0	3	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0004	2298	11	10	1	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0005	2298	7	6	1	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0006	2298	5	4	1	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0007	2298	5	3	2	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0008	2298	4	0	1	0	3	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0009	2298	4	0	1	3	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0010	2298	2	2	0	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0011	2298	2	0	0	0	0	2	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0012	2298	1	0	0	1	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0013	2298	1	1	0	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0014	2298	1	1	0	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0015	2298	1	1	0	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0016	2298	1	1	0	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0017	2298	1	0	0	1	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0018	2298	1	0	0	1	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0019	2298	1	0	0	1	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0020	2298	1	1	0	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0021	2298	1	0	0	0	0	1	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0022	2298	1	1	0	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0023	2298	1	0	0	1	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0024	2298	1	0	1	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0025	2298	1	0	1	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	c0026	2298	1	0	0	1	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRRAP_chr7_98873532_99018241	1/1	c0001	11622	167	25	30	88	10	12	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0002	11622	23	17	5	0	1	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0003	11622	10	7	3	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0004	11622	9	9	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0005	11622	6	6	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0006	11622	4	4	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0007	11622	2	2	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0008	11622	2	2	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0009	11622	2	2	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0010	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0011	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0012	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0013	11622	1	0	0	0	1	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0014	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0015	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0016	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0017	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0018	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0019	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241