JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRRAP_chr7_98873532_99018241	0/0	c0020	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0021	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0022	11622	1	0	0	0	0	1	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0023	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0024	11622	1	0	1	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0025	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0026	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0027	11622	1	0	1	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0028	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0029	11622	1	0	0	0	0	1	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0030	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0031	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0032	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0033	11622	1	0	0	0	0	1	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0034	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0035	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0036	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0037	11622	1	0	0	1	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0038	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0039	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0040	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0041	11622	1	0	0	0	0	1	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0042	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0043	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0044	11622	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0045	11622	1	0	0	0	0	1	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	c0046	11622	1	0	0	0	0	1	copy fasta	TRRAP	chr7	98873532	99018241
TRUB1_chr10_114933195_114982676	0/1	c0001	1050	116	69	19	4	5	18	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	1/0	c0002	1050	112	20	30	40	4	17	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	c0003	1050	5	0	2	0	3	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	c0004	1050	1	0	1	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	c0005	1050	1	1	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	c0006	1050	1	1	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	c0007	1050	1	1	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	c0008	1050	1	0	0	0	0	1	copy fasta	TRUB1	chr10	114933195	114982676
TRUB2_chr9_128300159_128327447	1/1	c0001	996	356	79	52	174	13	36	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0002	996	6	0	1	5	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0003	996	4	0	0	4	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0004	996	4	4	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0005	996	2	0	0	2	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0006	996	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0007	996	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0008	996	1	0	0	0	1	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0009	996	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0010	996	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	c0011	996	1	0	1	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TSACC_chr1_156333526_156351995	1/1	c0001	378	371	70	73	175	14	37	copy fasta	TSACC	chr1	156333526	156351995
TSACC_chr1_156333526_156351995	0/0	c0002	378	8	8	0	0	0	0	copy fasta	TSACC	chr1	156333526	156351995
TSACC_chr1_156333526_156351995	0/0	c0003	378	4	0	4	0	0	0	copy fasta	TSACC	chr1	156333526	156351995
TSACC_chr1_156333526_156351995	0/0	c0004	378	2	0	1	0	0	1	copy fasta	TSACC	chr1	156333526	156351995