JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSACC_chr1_156333526_156351995	0/0	c0005	378	1	0	0	1	0	0	copy fasta	TSACC	chr1	156333526	156351995
TSBP1_chr6_32287698_32376903	0/1	c0001	1686	140	10	36	72	6	15	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0002	1686	59	2	5	46	2	4	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0003	1686	54	6	2	41	0	5	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0004	1686	50	11	6	28	2	3	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0005	1686	41	18	11	3	4	5	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0006	1686	29	15	4	2	0	8	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0007	1686	20	15	5	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0008	1686	7	7	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0009	1686	6	0	0	3	0	3	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0010	1686	5	0	3	0	2	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0011	1686	3	3	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0012	1686	2	2	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0013	1686	1	1	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0014	1686	1	1	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0015	1686	1	0	0	1	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0016	1686	1	1	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	c0017	1686	1	0	0	0	0	1	copy fasta	TSBP1	chr6	32287698	32376903
TSC1_chr9_132886349_132949616	1/0	c0001	3495	234	53	36	114	6	24	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0002	3495	39	19	4	12	2	2	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/1	c0003	3495	17	4	8	4	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0004	3495	9	0	0	9	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0005	3495	9	0	9	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0006	3495	8	0	7	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0007	3495	4	4	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0008	3495	3	0	0	3	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0009	3495	2	2	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0010	3495	2	2	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0011	3495	2	2	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0012	3495	1	1	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0013	3495	1	1	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0014	3495	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0015	3495	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0016	3495	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0017	3495	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	c0018	3495	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC22D1_chr13_44427143_44581330	1/1	c0001	3222	205	48	42	86	8	19	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0002	3219	8	8	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0003	3219	6	0	6	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0004	3222	6	0	2	0	1	3	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0005	3222	4	4	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0006	3222	2	1	0	0	0	1	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0007	3222	1	1	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0008	3222	1	0	0	0	0	1	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0009	3222	1	0	1	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0010	3222	1	0	0	0	0	1	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0011	3222	1	0	1	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0012	3222	1	0	0	1	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0013	3222	1	0	0	0	1	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	c0014	3222	1	0	0	0	0	1	copy fasta	TSC22D1	chr13	44427143	44581330