JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSC22D1_chr13_44427143_44581330	0/0	c0015	3222	1	0	0	1	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D2_chr3_150403298_150471422	1/1	c0001	2271	287	41	49	157	7	31	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0002	2271	48	16	13	10	2	7	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0003	2271	27	4	5	8	2	8	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0004	2271	12	11	1	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0005	2271	9	7	2	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0006	2271	8	8	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0007	2271	3	3	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0008	2271	2	0	2	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0009	2271	2	2	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0010	2271	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0011	2271	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0012	2271	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0013	2271	1	0	0	0	1	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0014	2271	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	c0015	2271	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D3_chrX_107708221_107780787	1/1	c0001	603	212	74	32	77	9	18	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	c0002	603	2	0	0	2	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	c0003	603	1	0	0	1	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	c0004	604	1	0	0	1	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D4_chr7_100461519_100484214	1/0	c0001	1188	256	47	47	124	7	30	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0002	1188	52	33	8	1	5	5	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/1	c0003	1188	48	13	8	16	1	9	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0004	1188	6	0	0	6	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0005	1188	5	0	0	5	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0006	1188	3	0	0	3	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0007	1188	1	0	0	0	1	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0008	1188	1	0	1	0	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0009	1188	1	0	0	0	0	1	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0010	1188	1	0	0	1	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0011	1188	1	0	1	0	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0012	1188	1	0	0	0	0	1	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0013	1188	1	1	0	0	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	c0014	1188	1	0	1	0	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC2_chr16_2042985_2094491	1/0	c0001	5424	179	17	53	68	8	32	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/1	c0002	5424	31	22	7	0	1	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0003	5424	13	11	2	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0004	5424	8	8	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0005	5424	8	0	0	8	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0006	5424	7	6	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0007	5424	6	6	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0008	5424	4	0	2	0	1	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0009	5424	3	3	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0010	5424	3	0	0	0	2	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0011	5424	3	3	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0012	5424	3	3	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0013	5424	2	2	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0014	5424	2	0	1	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0015	5424	2	1	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0016	5424	2	2	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491