JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSC2_chr16_2042985_2094491	0/0	c0017	5424	2	0	0	0	0	2	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0018	5424	2	2	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0019	5424	2	0	1	0	1	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0020	5424	1	0	0	0	1	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0021	5424	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0022	5424	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0023	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0024	5424	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0025	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0026	5424	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0027	5424	1	0	0	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0028	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0029	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0030	5424	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0031	5424	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0032	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0033	5454	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0034	5424	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0035	5458	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0036	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0037	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0038	5406	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0039	5424	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0040	5458	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0041	5424	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0042	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0043	5424	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0044	5424	1	0	0	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0045	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0046	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0047	5424	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0048	5424	1	0	0	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0049	5424	1	0	0	0	1	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0050	5424	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0051	5424	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0052	5424	1	0	0	0	1	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0053	5424	1	0	0	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0054	5424	1	0	0	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	c0055	5424	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSEN15_chr1_184046730_184079212	1/1	c0001	516	290	83	55	113	13	24	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	c0002	516	130	12	17	80	5	16	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	c0003	516	1	1	0	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	c0004	516	1	0	0	1	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN2_chr3_12479480_12538658	1/1	c0001	1398	206	58	43	64	12	27	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0002	1398	23	5	8	3	4	3	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0003	1398	19	16	3	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0004	1398	15	0	6	7	0	2	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0005	1398	9	3	6	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0006	1398	3	3	0	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0007	1398	3	3	0	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658