JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSEN2_chr3_12479480_12538658	0/0	c0008	1398	2	2	0	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0009	1398	1	0	0	0	0	1	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0010	1398	1	1	0	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0011	1398	1	1	0	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	c0012	1398	1	0	0	0	0	1	copy fasta	TSEN2	chr3	12479480	12538658
TSEN34_chr19_54186308_54199532	0/1	c0001	933	259	76	64	72	13	33	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	c0002	933	129	13	24	80	3	9	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	c0003	933	34	2	0	32	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	c0004	933	3	0	0	3	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	c0005	933	2	2	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	c0006	933	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	c0007	933	1	1	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	c0008	933	1	1	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	c0009	933	1	1	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN54_chr17_75511528_75529735	0/1	c0001	1581	147	12	28	73	5	28	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	1/0	c0002	1581	114	3	24	80	2	4	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0003	1581	27	12	2	9	0	4	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0004	1581	22	9	5	0	3	5	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0005	1581	18	18	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0006	1581	15	14	1	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0007	1581	13	11	2	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0008	1587	13	0	8	0	3	2	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0009	1581	11	0	4	0	4	3	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0010	1581	10	0	2	7	0	1	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0011	1587	5	4	1	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0012	1581	4	2	2	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0013	1587	3	3	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0014	1581	2	0	0	2	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0015	1581	2	0	0	2	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0016	1581	2	0	1	0	0	1	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0017	1581	2	0	0	0	1	1	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0018	1556	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0019	1581	1	0	0	0	0	1	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0020	1581	1	1	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0021	1581	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0022	1581	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0023	1581	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0024	1581	1	0	1	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0025	1581	1	1	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0026	1581	1	1	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0027	1581	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0028	1581	1	0	1	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0029	1581	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0030	1581	1	1	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	c0031	1581	1	0	0	1	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSFM_chr12_57777787_57802587	1/1	c0001	978	220	79	54	57	8	20	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	c0002	978	135	7	23	80	6	19	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	c0003	978	4	4	0	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	c0004	978	3	2	1	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	c0005	978	1	0	0	1	0	0	copy fasta	TSFM	chr12	57777787	57802587