JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSFM_chr12_57777787_57802587	0/0	c0006	978	1	0	0	1	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	c0007	978	1	0	0	1	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	c0008	978	1	0	0	0	0	1	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	c0009	978	1	1	0	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	c0010	978	1	1	0	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSG101_chr11_18475311_18531942	1/1	c0001	1173	329	86	60	135	12	34	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	c0002	1173	65	0	7	50	0	8	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	c0003	1173	6	6	0	0	0	0	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	c0004	1173	3	2	1	0	0	0	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	c0005	1173	1	0	0	0	0	1	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	c0006	1173	1	0	0	1	0	0	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	c0007	1173	1	0	0	0	0	1	copy fasta	TSG101	chr11	18475311	18531942
TSGA10IP_chr11_65940480_65964966	0/0	c0001	1671	171	14	36	102	3	16	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	1/1	c0002	1671	125	32	25	41	3	22	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0003	1671	22	0	1	21	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0004	1671	19	18	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0005	1671	9	8	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0006	1671	7	6	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0007	1671	6	0	0	6	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0008	1671	4	0	2	0	2	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0009	1671	4	4	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0010	1671	3	3	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0011	1671	3	3	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0012	1671	3	2	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0013	1671	3	3	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0014	1671	2	2	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0015	1671	2	2	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0016	1671	1	0	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0017	1671	1	0	0	1	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0018	1671	1	0	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0019	1671	1	1	0	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0020	1671	1	0	0	1	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0021	1671	1	0	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0022	1671	1	0	0	1	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0023	1671	1	0	0	1	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	c0024	1671	1	0	1	0	0	0	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10_chr2_98992261_99159942	1/1	c0001	2097	315	78	71	127	10	27	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	c0002	2097	2	0	0	2	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	c0003	2097	1	0	0	0	0	1	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	c0004	2097	1	1	0	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	c0005	2097	1	0	1	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	c0006	2097	1	0	0	1	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	c0007	2097	1	1	0	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	c0008	2097	1	0	0	0	0	1	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	c0009	2097	1	0	0	0	0	1	copy fasta	TSGA10	chr2	98992261	99159942
TSGA13_chr7_130663643_130691545	1/1	c0001	828	373	95	70	144	16	46	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	c0002	828	12	0	0	12	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	c0003	828	1	1	0	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSHB_chr1_115024826_115039302	0/1	c0001	417	421	96	77	191	16	40	copy fasta	TSHB	chr1	115024826	115039302
TSHB_chr1_115024826_115039302	1/0	c0002	417	3	0	0	0	2	0	copy fasta	TSHB	chr1	115024826	115039302