JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSHB_chr1_115024826_115039302	0/0	c0003	417	2	2	0	0	0	0	copy fasta	TSHB	chr1	115024826	115039302
TSHB_chr1_115024826_115039302	0/0	c0004	417	1	0	0	1	0	0	copy fasta	TSHB	chr1	115024826	115039302
TSHB_chr1_115024826_115039302	0/0	c0005	417	1	0	1	0	0	0	copy fasta	TSHB	chr1	115024826	115039302
TSHR_chr14_80950621_81151306	0/1	c0001	2295	146	30	29	67	5	14	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0002	2295	65	38	5	19	0	3	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0003	2295	24	8	3	9	1	3	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0004	2295	13	0	2	0	0	11	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	1/0	c0005	2295	11	1	3	5	0	1	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0006	2295	2	2	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0007	2295	2	2	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0008	2295	2	1	0	0	0	1	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0009	2295	2	2	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0010	2295	1	0	0	0	0	1	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0011	2295	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	c0012	2295	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHZ1_chr18_75205797_75294944	1/0	c0001	3234	194	49	31	88	7	18	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/1	c0002	3234	49	1	15	23	4	5	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0003	3234	11	0	3	3	1	4	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0004	3234	7	0	4	0	1	2	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0005	3234	7	7	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0006	3234	5	5	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0007	3234	5	0	1	2	1	1	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0008	3234	5	0	1	4	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0009	3234	4	4	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0010	3234	3	3	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0011	3234	3	3	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0012	3234	3	0	2	0	1	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0013	3234	3	0	0	0	0	3	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0014	3234	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0015	3234	2	0	0	2	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0016	3234	2	1	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0017	3234	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0018	3234	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0019	3234	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0020	3234	1	0	0	0	0	1	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0021	3234	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0022	3234	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0023	3234	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0024	3234	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0025	3234	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0026	3234	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0027	3234	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0028	3234	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0029	3234	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0030	3234	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0031	3234	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0032	3234	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0033	3234	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0034	3234	1	0	0	0	1	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	c0035	3234	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944