JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSHZ1_chr18_75205797_75294944	0/0	c0036	3234	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ2_chr20_52967358_53500330	0/0	c0001	3105	106	33	13	39	1	20	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0002	3105	28	1	10	13	2	2	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0003	3105	15	15	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0004	3105	3	3	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0005	3105	3	0	2	0	1	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0006	3105	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0007	3105	2	0	2	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0008	3105	2	0	0	0	0	2	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0009	3105	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0010	3105	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0011	3105	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0012	3105	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0013	3105	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0014	3105	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0015	3105	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0016	3105	1	0	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0017	3105	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	c0018	3105	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ3_chr19_31269945_31354436	0/0	c0001	3246	102	11	14	58	6	13	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	1/0	c0002	3246	54	12	12	19	1	9	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0003	3246	49	26	8	12	0	3	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0004	3246	44	11	6	14	3	10	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0005	3246	36	10	6	17	0	3	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/1	c0006	3246	21	2	6	12	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0007	3246	6	5	1	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0008	3246	4	4	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0009	3246	3	0	3	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0010	3246	2	2	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0011	3246	2	0	2	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0012	3246	2	0	0	0	0	2	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0013	3246	2	2	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0014	3246	2	2	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0015	3246	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0016	3246	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0017	3246	1	0	0	0	0	1	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0018	3246	1	0	1	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0019	3246	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0020	3246	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0021	3246	1	0	1	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0022	3246	1	1	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0023	3246	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0024	3246	1	1	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0025	3246	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0026	3246	1	0	0	0	0	1	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	c0027	3246	1	1	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSKS_chr19_49734760_49768306	1/1	c0001	1779	333	59	66	152	14	40	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0002	1761	29	5	2	19	0	3	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0003	1761	10	6	0	3	0	1	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0004	1761	9	5	2	2	0	0	copy fasta	TSKS	chr19	49734760	49768306