JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSKS_chr19_49734760_49768306	0/0	c0005	1761	9	7	2	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0006	1779	5	0	1	0	1	3	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0007	1761	3	3	0	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0008	1779	3	0	0	3	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0009	1761	2	2	0	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0010	1779	2	0	2	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0011	1779	2	2	0	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0012	1761	2	2	0	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0013	1779	1	0	0	0	1	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0014	1779	1	0	0	1	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0015	1779	1	0	0	1	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0016	1779	1	0	0	0	0	1	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0017	1779	1	0	0	1	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0018	1779	1	0	1	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0019	1779	1	1	0	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0020	1761	1	1	0	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKS_chr19_49734760_49768306	0/0	c0021	1779	1	1	0	0	0	0	copy fasta	TSKS	chr19	49734760	49768306
TSKU_chr11_76778356_76803144	0/1	c0001	1062	288	61	45	146	10	25	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	1/0	c0002	1062	66	1	20	23	7	14	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0003	1062	22	2	0	20	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0004	1062	18	14	4	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0005	1062	11	9	2	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0006	1062	6	6	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0007	1062	3	0	0	3	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0008	1062	2	2	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0009	1062	2	0	0	0	0	2	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0010	1062	2	2	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0011	1062	2	2	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0012	1062	1	1	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0013	1062	1	0	1	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0014	1062	1	0	1	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0015	1062	1	0	0	0	0	1	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0016	1062	1	0	0	1	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0017	1062	1	0	0	1	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0018	1062	1	0	1	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	c0019	1062	1	0	0	0	1	0	copy fasta	TSKU	chr11	76778356	76803144
TSLP_chr5_111066713_111083026	1/1	c0001	480	469	98	78	229	16	46	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	c0002	480	2	0	0	2	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	c0003	480	1	0	0	1	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSNARE1_chr8_142207080_142408182	1/0	c0001	1542	69	8	19	22	5	14	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/1	c0002	1542	65	34	14	11	1	4	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0003	1542	38	1	8	25	0	4	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0004	1542	13	7	3	1	0	2	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0005	1542	11	10	0	0	1	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0006	1542	10	5	1	3	0	1	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0007	1542	9	1	4	4	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0008	1542	8	0	0	8	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0009	1542	3	0	0	3	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0010	1542	2	0	0	1	0	1	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0011	1542	1	1	0	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182