JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BICD1_chr12_32101847_32388633	0/0	c0003	2928	9	0	1	1	0	7	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	c0004	2928	3	0	0	3	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	c0005	2928	2	2	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	c0006	2928	1	0	0	0	0	1	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	c0007	2928	1	1	0	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	c0008	2928	1	0	1	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	c0009	2928	1	0	1	0	0	0	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	c0010	2928	1	0	0	0	1	0	copy fasta	BICD1	chr12	32101847	32388633
BICD2_chr9_92706363_92769833	1/1	c0001	2568	334	70	65	147	17	33	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0002	2568	11	0	0	11	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0003	2568	2	2	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0004	2568	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0005	2568	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0006	2568	1	0	0	0	0	1	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0007	2568	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0008	2568	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0009	2568	1	1	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0010	2568	1	1	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0011	2568	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0012	2568	1	0	0	0	1	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0013	2568	1	0	1	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0014	2568	1	0	0	0	0	1	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0015	2568	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	c0016	2568	1	0	0	0	0	1	copy fasta	BICD2	chr9	92706363	92769833
BICDL1_chr12_119984236_120099494	1/0	c0001	1866	261	68	37	132	6	17	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	c0002	1866	24	15	3	3	0	3	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	c0003	1866	3	3	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	c0004	1866	2	0	0	0	0	2	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	c0005	1866	2	2	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	c0006	1866	1	1	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	c0007	1866	1	1	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	c0008	1866	1	0	0	1	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/1	c0009	1866	1	0	0	0	0	0	copy fasta	BICDL1	chr12	119984236	120099494
BICDL2_chr16_3022682_3041944	1/1	c0001	1527	187	48	26	88	5	18	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0002	1527	99	22	16	44	7	10	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0003	1527	59	4	14	27	2	12	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0004	1527	16	0	9	5	0	2	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0005	1527	7	7	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0006	1527	7	3	3	0	0	1	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0007	1527	3	2	0	0	0	1	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0008	1527	2	0	0	0	2	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0009	1527	2	2	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0010	1527	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0011	1527	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0012	1527	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0013	1527	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0014	1527	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0015	1527	1	0	0	1	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0016	1527	1	0	0	1	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	c0017	1527	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944