JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSNARE1_chr8_142207080_142408182	0/0	c0012	1542	1	1	0	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0013	1542	1	0	1	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0014	1542	1	0	0	0	0	1	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0015	1542	1	0	0	0	0	1	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0016	1542	1	0	0	0	1	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0017	1542	1	1	0	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0018	1542	1	0	0	1	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0019	1542	1	0	0	1	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	c0020	1542	1	1	0	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNAXIP1_chr16_67801889_67833068	1/1	c0001	2139	237	80	42	78	4	31	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0002	2139	5	5	0	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0003	2139	3	0	2	0	1	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0004	2139	2	2	0	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0005	2139	2	0	2	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0006	2139	1	1	0	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0007	2139	1	1	0	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0008	2139	1	0	0	0	1	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0009	2139	1	0	0	0	0	1	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0010	2139	1	1	0	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0011	2139	1	0	1	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	c0012	2139	1	0	1	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAX_chr1_231523669_231571524	1/1	c0001	873	389	89	60	175	18	45	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	c0002	873	1	0	0	0	0	1	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	c0003	873	1	0	0	1	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	c0004	873	1	1	0	0	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSN_chr2_121750651_121772853	1/1	c0001	687	390	94	66	176	14	38	copy fasta	TSN	chr2	121750651	121772853
TSPAN10_chr17_81632196_81653749	0/0	c0001	1068	214	47	34	105	7	21	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0002	1068	56	0	1	49	2	4	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/1	c0003	1068	55	25	14	0	6	9	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0004	1068	28	0	10	18	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0005	1072	27	5	14	0	3	5	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0006	1068	7	7	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0007	1072	4	0	2	0	0	2	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0008	1068	3	3	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0009	1068	2	2	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0010	1068	2	0	0	0	0	2	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0011	1072	1	1	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0012	1072	1	0	0	0	0	1	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	1/0	c0013	1068	1	0	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0014	1068	1	0	0	0	0	1	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0015	1068	1	0	1	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0016	1068	1	0	1	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0017	1068	1	1	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0018	1068	1	0	1	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0019	1068	1	0	1	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0020	1068	1	0	1	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0021	1068	1	1	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	c0022	1068	1	0	0	0	0	1	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN11_chr12_30921748_31001599	0/1	c0001	762	241	57	55	87	9	32	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0002	762	102	29	12	52	1	8	copy fasta	TSPAN11	chr12	30921748	31001599