JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSPAN11_chr12_30921748_31001599	0/0	c0003	762	17	0	1	11	1	4	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	1/0	c0004	762	15	1	5	5	1	2	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0005	762	3	3	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0006	762	3	0	0	3	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0007	762	2	2	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0008	762	2	0	0	2	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0009	762	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0010	762	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0011	762	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0012	762	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0013	762	1	0	1	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0014	762	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0015	762	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0016	762	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	c0017	762	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN12_chr7_120782320_120863144	0/1	c0001	918	254	72	41	121	1	18	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	1/0	c0002	918	36	16	11	3	1	4	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	c0003	918	2	2	0	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	c0004	918	1	0	1	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	c0005	918	1	0	1	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN13_chr7_16748755_16789536	1/0	c0001	615	203	32	28	120	5	17	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/1	c0002	615	118	21	31	41	2	22	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	c0003	615	60	29	9	19	3	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	c0004	615	58	14	14	17	4	9	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	c0005	615	1	0	0	1	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN14_chr10_80449310_80527631	1/1	c0001	813	233	72	62	46	12	39	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	c0002	813	15	13	2	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	c0003	813	2	2	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	c0004	813	1	0	0	0	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	c0005	813	1	1	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN15_chr10_69446465_69512666	1/1	c0001	885	325	81	64	121	15	42	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	c0002	885	11	11	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	c0003	885	1	1	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	c0004	885	1	1	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	c0005	885	1	0	0	1	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	c0006	885	1	0	0	0	1	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN16_chr19_11291160_11320967	1/1	c0001	735	357	74	66	168	17	30	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	c0002	735	17	16	1	0	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	c0003	735	3	1	1	1	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	c0004	735	1	0	0	1	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	c0005	735	1	1	0	0	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	c0006	735	1	0	0	0	1	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	c0007	735	1	1	0	0	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	c0008	735	1	1	0	0	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN17_chr5_176642484_176664051	1/1	c0001	990	271	81	61	88	11	28	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	c0002	990	119	6	11	83	6	13	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	c0003	990	8	4	3	0	1	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	c0004	990	3	0	0	3	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	c0005	990	3	3	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	c0006	990	1	1	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051