JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSPAN17_chr5_176642484_176664051	0/0	c0007	990	1	0	1	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	c0008	990	1	0	1	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	c0009	990	1	0	1	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	c0010	990	1	0	0	0	0	1	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	c0011	990	1	1	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN18_chr11_44721962_44937423	1/0	c0001	747	185	76	38	45	12	13	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	c0002	747	90	3	21	44	4	18	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	c0003	747	8	7	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	c0004	747	2	2	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	c0005	747	1	0	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/1	c0006	747	1	0	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	c0007	747	1	0	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	c0008	747	1	0	0	0	0	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	c0009	747	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN19_chr12_85009317_85041277	1/1	c0001	747	342	81	67	142	14	36	copy fasta	TSPAN19	chr12	85009317	85041277
TSPAN19_chr12_85009317_85041277	0/0	c0002	746	6	6	0	0	0	0	copy fasta	TSPAN19	chr12	85009317	85041277
TSPAN19_chr12_85009317_85041277	0/0	c0003	747	1	1	0	0	0	0	copy fasta	TSPAN19	chr12	85009317	85041277
TSPAN19_chr12_85009317_85041277	0/0	c0004	747	1	0	1	0	0	0	copy fasta	TSPAN19	chr12	85009317	85041277
TSPAN1_chr1_46170087_46190962	1/1	c0001	726	417	87	75	189	18	46	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	c0002	726	12	11	1	0	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	c0003	726	2	0	0	2	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	c0004	726	1	0	0	1	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	c0005	726	1	1	0	0	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	c0006	726	1	1	0	0	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	c0007	726	1	0	0	1	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	c0008	726	1	0	0	1	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN2_chr1_115043011_115094503	1/1	c0001	666	221	61	39	80	15	24	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	c0002	666	107	11	19	68	1	8	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	c0003	666	30	20	4	2	0	4	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	c0004	666	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	c0005	666	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	c0006	666	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	c0007	666	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN31_chr12_57740039_57755219	1/1	c0001	633	372	90	78	142	18	42	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN32_chr11_2297013_2323204	1/0	c0001	963	212	41	30	125	2	13	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/1	c0002	963	170	51	45	32	11	30	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0003	963	14	0	0	14	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0004	963	5	0	2	0	1	2	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0005	963	2	2	0	0	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0006	963	2	0	0	2	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0007	963	1	0	0	1	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0008	963	1	0	0	0	0	1	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0009	963	1	0	0	1	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0010	963	1	1	0	0	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0011	963	1	0	1	0	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0012	963	1	0	0	1	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	c0013	963	1	1	0	0	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN33_chr7_129139707_129174699	1/1	c0001	852	429	92	67	206	16	46	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	c0002	852	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	c0003	852	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699